PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00013026-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family bZIP
Protein Properties Length: 162aa    MW: 18124.3 Da    PI: 10.6738
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00013026-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_1452.4e-1483144162
                       XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
            bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 
                       +ke kr +r+ +NR++A+  R+RKka++  Le++vke+e +N++L ++l++l++e   l++ 
  PSME_00013026-RA  83 DKEHKRLKRLLRNRVSAQQARERKKAYLNDLETRVKEIELKNSELEERLSTLQNENHMLRQI 144
                       5899***************************************************9988875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.8E-1483147IPR004827Basic-leucine zipper domain
PfamPF001702.6E-1384145IPR004827Basic-leucine zipper domain
PROSITE profilePS5021712.25485148IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1704.2E-1687147No hitNo description
SuperFamilySSF579592.94E-1387145No hitNo description
CDDcd147041.94E-1788139No hitNo description
PROSITE patternPS00036090105IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009737Biological Processresponse to abscisic acid
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0010017Biological Processred or far-red light signaling pathway
GO:0010099Biological Processregulation of photomorphogenesis
GO:0010114Biological Processresponse to red light
GO:0010218Biological Processresponse to far red light
GO:0010224Biological Processresponse to UV-B
GO:0031539Biological Processpositive regulation of anthocyanin metabolic process
GO:0042753Biological Processpositive regulation of circadian rhythm
GO:0080167Biological Processresponse to karrikin
GO:0005634Cellular Componentnucleus
GO:0003690Molecular Functiondouble-stranded DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 162 aa     Download sequence    Send to blast
MQDTAASTST QHQSTSEKSS SSAAPAPFRQ AKDAIESDDD IRRVPEMGGM QAGPSSCVPM  60
RLDNPQPTTG VVTHRKRGRA PADKEHKRLK RLLRNRVSAQ QARERKKAYL NDLETRVKEI  120
ELKNSELEER LSTLQNENHM LRQILKNTTM KKKGSGNSGT ET
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2oqq_B1e-13108147342Transcription factor HY5
2oqq_A1e-13108147342Transcription factor HY5
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00117ampDAPTransfer from AT5G11260Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1127660.0BT112766.1 Picea glauca clone GQ03320_K06 mRNA sequence.
GenBankEF0846360.0EF084636.1 Picea sitchensis clone WS02719_D24 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009399756.16e-54PREDICTED: transcription factor HY5-like
SwissprotQ9SM507e-52HY5_SOLLC; Transcription factor HY5
TrEMBLA9NTI71e-101A9NTI7_PICSI; Putative uncharacterized protein
STRINGPOPTR_0018s01530.18e-53(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11260.11e-49bZIP family protein